Another update to this:
The motor is back together and runs fine. Turns out the guy I bought it from also bought a set of lifters, so those were thrown in as well. I should have looked in those boxes better. :shaking:
The rod bearings were worn, but no signs of scoring so I put new stock size bearings back in. The rear main seal didn't give me any trouble and that main bearing looked nearly new, so I feel good about not dropping the crank. The entire thing was cleaned and flushed as best I could with the block still in the Jeep. I did pull the radiator again and backflush it after running a bit to clear out any crud broken loose. I'm still missing bits and pieces under the engine bay that were either broken or not there in the first place.
There are two issues right now that need to be fixed before I drive it. The TPS is bad and throwing all sorts of codes, and of course the housing cracked when I drilled out the stuck screws so that will need replacing. If anyone has a spare feel free to bring it to the meeting tomorrow night and I'll take it off your hands. The other issue is the NSS that also threw a code after running it awhile on jackstands. I'm going to try to disassemble it and clean it.
I was able to finish painting the new header panel and get that put in today along with the brush guard that came on it. I need a few clips here and there to tidy it up and that's just about it.